599 lines
25 KiB
Markdown
599 lines
25 KiB
Markdown
---
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stage: Data Stores
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group: Pods
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info: To determine the technical writer assigned to the Stage/Group associated with this page, see https://about.gitlab.com/handbook/engineering/ux/technical-writing/#assignments
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---
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# Multiple Databases
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To allow GitLab to scale further we
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[decomposed the GitLab application database into multiple databases](https://gitlab.com/groups/gitlab-org/-/epics/6168).
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The two databases are `main` and `ci`. GitLab supports being run with either one database or two databases.
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On GitLab.com we are using two separate databases.
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## GitLab Schema
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For properly discovering allowed patterns between different databases
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the GitLab application implements the `lib/gitlab/database/gitlab_schemas.yml` YAML file.
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This file provides a virtual classification of tables into a `gitlab_schema`
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which conceptually is similar to [PostgreSQL Schema](https://www.postgresql.org/docs/current/ddl-schemas.html).
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We decided as part of [using database schemas to better isolated CI decomposed features](https://gitlab.com/gitlab-org/gitlab/-/issues/333415)
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that we cannot use PostgreSQL schema due to complex migration procedures. Instead we implemented
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the concept of application-level classification.
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Each table of GitLab needs to have a `gitlab_schema` assigned:
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- `gitlab_main`: describes all tables that are being stored in the `main:` database (for example, like `projects`, `users`).
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- `gitlab_ci`: describes all CI tables that are being stored in the `ci:` database (for example, `ci_pipelines`, `ci_builds`).
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- `gitlab_geo`: describes all Geo tables that are being stored in the `geo:` database (for example, like `project_registry`, `secondary_usage_data`).
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- `gitlab_shared`: describe all application tables that contain data across all decomposed databases (for example, `loose_foreign_keys_deleted_records`) for models that inherit from `Gitlab::Database::SharedModel`.
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- `gitlab_internal`: describe all internal tables of Rails and PostgreSQL (for example, `ar_internal_metadata`, `schema_migrations`, `pg_*`).
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- `...`: more schemas to be introduced with additional decomposed databases
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The usage of schema enforces the base class to be used:
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- `ApplicationRecord` for `gitlab_main`
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- `Ci::ApplicationRecord` for `gitlab_ci`
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- `Geo::TrackingBase` for `gitlab_geo`
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- `Gitlab::Database::SharedModel` for `gitlab_shared`
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### The impact of `gitlab_schema`
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The usage of `gitlab_schema` has a significant impact on the application.
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The `gitlab_schema` primary purpose is to introduce a barrier between different data access patterns.
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This is used as a primary source of classification for:
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- [Discovering cross-joins across tables from different schemas](#removing-joins-between-ci-and-non-ci-tables)
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- [Discovering cross-database transactions across tables from different schemas](#removing-cross-database-transactions)
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### The special purpose of `gitlab_shared`
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`gitlab_shared` is a special case that describes tables or views that, by design, contain data across
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all decomposed databases. This classification describes application-defined tables (like `loose_foreign_keys_deleted_records`).
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**Be careful** to use `gitlab_shared` as it requires special handling while accessing data.
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Since `gitlab_shared` shares not only structure but also data, the application needs to be written in a way
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that traverses all data from all databases in sequential manner.
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```ruby
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Gitlab::Database::EachDatabase.each_model_connection([MySharedModel]) do |connection, connection_name|
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MySharedModel.select_all_data...
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end
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```
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As such, migrations modifying data of `gitlab_shared` tables are expected to run across
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all decomposed databases.
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### The special purpose of `gitlab_internal`
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`gitlab_internal` describes Rails-defined tables (like `schema_migrations` or `ar_internal_metadata`), as well as internal PostgreSQL tables (for example, `pg_attribute`). Its primary purpose is to [support other databases](https://gitlab.com/gitlab-org/gitlab/-/merge_requests/85842#note_943453682), like Geo, that
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might be missing some of those application-defined `gitlab_shared` tables (like `loose_foreign_keys_deleted_records`), but are valid Rails databases.
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## Migrations
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Read [Migrations for Multiple Databases](migrations_for_multiple_databases.md).
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## CI/CD Database
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### Configure single database
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By default, GDK is configured to run with multiple databases.
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WARNING:
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Switching back-and-forth between single and multiple databases in
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the same development instance is discouraged. Any data in the `ci`
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database will not be accessible in single database mode. For single database, you should use a separate development instance.
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To configure GDK to use a single database:
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1. On the GDK root directory, run:
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```shell
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gdk config set gitlab.rails.databases.ci.enabled false
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```
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1. Reconfigure GDK:
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```shell
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gdk reconfigure
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```
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To switch back to using multiple databases, set `gitlab.rails.databases.ci.enabled` to `true` and run `gdk reconfigure`.
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<!--
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NOTE: The `validate_cross_joins!` method in `spec/support/database/prevent_cross_joins.rb` references
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the following heading in the code, so if you make a change to this heading, make sure to update
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the corresponding documentation URL used in `spec/support/database/prevent_cross_joins.rb`.
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-->
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### Removing joins between `ci` and non `ci` tables
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Queries that join across databases raise an error. [Introduced](https://gitlab.com/gitlab-org/gitlab/-/merge_requests/68620)
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in GitLab 14.3, for new queries only. Pre-existing queries do not raise an error.
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Because GitLab can be run with multiple separate databases, referencing `ci`
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tables with non `ci` tables in a single query is not possible. Therefore,
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using any kind of `JOIN` in SQL queries will not work.
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#### Suggestions for removing cross-database joins
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The following sections are some real examples that were identified as joining across databases,
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along with possible suggestions on how to fix them.
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##### Remove the code
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The simplest solution we've seen several times now has been an existing scope
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that is unused. This is the easiest example to fix. So the first step is to
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investigate if the code is unused and then remove it. These are some
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real examples:
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- <https://gitlab.com/gitlab-org/gitlab/-/merge_requests/67162>
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- <https://gitlab.com/gitlab-org/gitlab/-/merge_requests/66714>
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- <https://gitlab.com/gitlab-org/gitlab/-/merge_requests/66503>
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There may be more examples where the code is used, but we can evaluate
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if we need it or if the feature should behave this way.
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Before complicating things by adding new columns and tables,
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consider if you can simplify the solution and still meet the requirements.
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One case being evaluated involves changing how certain `UsageData` is
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calculated to remove a join query in
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<https://gitlab.com/gitlab-org/gitlab/-/issues/336170>. This is a good candidate
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to evaluate, because `UsageData` is not critical to users and it may be possible
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to get a similarly useful metric with a simpler approach. Alternatively we may
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find that nobody is using these metrics, so we can remove them.
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##### Use `preload` instead of `includes`
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The `includes` and `preload` methods in Rails are both ways to avoid an N+1
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query. The `includes` method in Rails uses a heuristic approach to determine
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if it needs to join to the table, or if it can load all of the
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records in a separate query. This method assumes it needs to join if it thinks
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you need to query the columns from the other table, but sometimes
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this method gets it wrong and executes a join even when not needed. In
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this case using `preload` to explicitly load the data in a separate query
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allows you to avoid the join, while still avoiding the N+1 query.
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You can see a real example of this solution being used in
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<https://gitlab.com/gitlab-org/gitlab/-/merge_requests/67655>.
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##### De-normalize some foreign key to the table
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De-normalization refers to adding redundant precomputed (duplicated) data to
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a table to simplify certain queries or to improve performance. In this
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case, it can be useful when you are doing a join that involves three tables, where
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you are joining through some intermediate table.
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Generally when modeling a database schema, a "normalized" structure is
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preferred because of the following reasons:
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- Duplicate data uses extra storage.
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- Duplicate data needs to be kept in sync.
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Sometimes normalized data is less performant so de-normalization has been a
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common technique GitLab has used to improve the performance of database queries
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for a while. The above problems are mitigated when the following conditions are
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met:
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1. There isn't much data (for example, it's just an integer column).
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1. The data does not update often (for example, the `project_id` column is almost
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never updated for most tables).
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One example we found was the `security_scans` table. This table has a foreign
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key `security_scans.build_id` which allows you to join to the build. Therefore
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you could join to the project like so:
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```sql
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select projects.* from security_scans
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inner join ci_builds on security_scans.build_id = ci_builds.id
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inner join projects on ci_builds.project_id = projects.id
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```
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The problem with this query is that `ci_builds` is in a different database
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from the other two tables.
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The solution in this case is to add the `project_id` column to
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`security_scans`. This doesn't use much extra storage, and due to the way
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these features work, it's never updated (a build never moves projects).
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This simplified the query to:
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```sql
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select projects.* from security_scans
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inner join projects on security_scans.project_id = projects.id
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```
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This also improves performance because you don't need to join through an extra
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table.
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You can see this approach implemented in
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<https://gitlab.com/gitlab-org/gitlab/-/merge_requests/66963> . This MR also
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de-normalizes `pipeline_id` to fix a similar query.
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##### De-normalize into an extra table
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Sometimes the previous de-normalization (adding an extra column) doesn't work for
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your specific case. This may be due to the fact that your data is not 1:1, or
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because the table you're adding to is already too wide (for example, the `projects`
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table shouldn't have more columns added).
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In this case you may decide to just store the extra data in a separate table.
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One example where this approach is being used was to implement the
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`Project.with_code_coverage` scope. This scope was essentially used to narrow
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down a list of projects to only those that have at one point in time used code
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coverage features. This query (simplified) was:
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```sql
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select projects.* from projects
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inner join ci_daily_build_group_report_results on ci_daily_build_group_report_results.project_id = projects.id
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where ((data->'coverage') is not null)
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and ci_daily_build_group_report_results.default_branch = true
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group by projects.id
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```
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This work is still in progress but the current plan is to introduce a new table
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called `projects_with_ci_feature_usage` which has 2 columns `project_id` and
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`ci_feature`. This table would be written to the first time a project creates a
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`ci_daily_build_group_report_results` for code coverage. Therefore the new
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query would be:
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```sql
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select projects.* from projects
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inner join projects_with_ci_feature_usage on projects_with_ci_feature_usage.project_id = projects.id
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where projects_with_ci_feature_usage.ci_feature = 'code_coverage'
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```
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The above example uses as a text column for simplicity but we should probably
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use an [enum](creating_enums.md) to save space.
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The downside of this new design is that this may need to be
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updated (removed if the `ci_daily_build_group_report_results` is deleted).
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Depending on your domain, however, this may not be necessary because deletes are
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edge cases or impossible, or because the user impact of seeing the project on the
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list page may not be problematic. It's also possible to implement the
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logic to delete these rows if or whenever necessary in your domain.
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Finally, this de-normalization and new query also improves performance because
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it does less joins and needs less filtering.
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##### Remove a redundant join
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Sometimes there are cases where a query is doing excess (or redundant) joins.
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A common example occurs where a query is joining from `A` to `C`, via some
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table with both foreign keys, `B`.
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When you only care about counting how
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many rows there are in `C` and if there are foreign keys and `NOT NULL` constraints
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on the foreign keys in `B`, then it might be enough to count those rows.
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For example, in
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[MR 71811](https://gitlab.com/gitlab-org/gitlab/-/merge_requests/71811), it was
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previously doing `project.runners.count`, which would produce a query like:
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```sql
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select count(*) from projects
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inner join ci_runner_projects on ci_runner_projects.project_id = projects.id
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where ci_runner_projects.runner_id IN (1, 2, 3)
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```
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This was changed to avoid the cross-join by changing the code to
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`project.runner_projects.count`. It produces the same response with the
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following query:
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```sql
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select count(*) from ci_runner_projects
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where ci_runner_projects.runner_id IN (1, 2, 3)
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```
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Another common redundant join is joining all the way to another table,
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then filtering by primary key when you could have instead filtered on a foreign
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key. See an example in
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[MR 71614](https://gitlab.com/gitlab-org/gitlab/-/merge_requests/71614). The previous
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code was `joins(scan: :build).where(ci_builds: { id: build_ids })`, which
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generated a query like:
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```sql
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select ...
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inner join security_scans
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inner join ci_builds on security_scans.build_id = ci_builds.id
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where ci_builds.id IN (1, 2, 3)
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```
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However, as `security_scans` already has a foreign key `build_id`, the code
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can be changed to `joins(:scan).where(security_scans: { build_id: build_ids })`,
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which produces the same response with the following query:
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```sql
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select ...
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inner join security_scans
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where security_scans.build_id IN (1, 2, 3)
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```
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Both of these examples of removing redundant joins remove the cross-joins,
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but they have the added benefit of producing simpler and faster
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queries.
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##### Use `disable_joins` for `has_one` or `has_many` `through:` relations
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Sometimes a join query is caused by using `has_one ... through:` or `has_many
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... through:` across tables that span the different databases. These joins
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sometimes can be solved by adding
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[`disable_joins:true`](https://edgeguides.rubyonrails.org/active_record_multiple_databases.html#handling-associations-with-joins-across-databases).
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This is a Rails feature which we
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[backported](https://gitlab.com/gitlab-org/gitlab/-/merge_requests/66400). We
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also extended the feature to allow a lambda syntax for enabling `disable_joins`
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with a feature flag. If you use this feature we encourage using a feature flag
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as it mitigates risk if there is some serious performance regression.
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You can see an example where this was used in
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<https://gitlab.com/gitlab-org/gitlab/-/merge_requests/66709/diffs>.
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With any change to DB queries it is important to analyze and compare the SQL
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before and after the change. `disable_joins` can introduce very poorly performing
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code depending on the actual logic of the `has_many` or `has_one` relationship.
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The key thing to look for is whether any of the intermediate result sets
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used to construct the final result set have an unbounded amount of data loaded.
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The best way to tell is by looking at the SQL generated and confirming that
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each one is limited in some way. You can tell by either a `LIMIT 1` clause or
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by `WHERE` clause that is limiting based on a unique column. Any unbounded
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intermediate dataset could lead to loading too many IDs into memory.
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An example where you may see very poor performance is the following
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hypothetical code:
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```ruby
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class Project
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has_many :pipelines
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has_many :builds, through: :pipelines
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end
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class Pipeline
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has_many :builds
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end
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class Build
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belongs_to :pipeline
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end
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def some_action
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@builds = Project.find(5).builds.order(created_at: :desc).limit(10)
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end
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```
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In the above case `some_action` will generate a query like:
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```sql
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select * from builds
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inner join pipelines on builds.pipeline_id = pipelines.id
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where pipelines.project_id = 5
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order by builds.created_at desc
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limit 10
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```
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However, if you changed the relation to be:
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```ruby
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class Project
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has_many :pipelines
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has_many :builds, through: :pipelines, disable_joins: true
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end
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```
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Then you would get the following 2 queries:
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```sql
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select id from pipelines where project_id = 5;
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select * from builds where pipeline_id in (...)
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order by created_at desc
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limit 10;
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```
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Because the first query does not limit by any unique column or
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have a `LIMIT` clause, it can load an unlimited number of
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pipeline IDs into memory, which are then sent in the following query.
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This can lead to very poor performance in the Rails application and the
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database. In cases like this, you might need to re-write the
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query or look at other patterns described above for removing cross-joins.
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#### How to validate you have correctly removed a cross-join
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RSpec is configured to automatically validate all SQL queries do not join
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across databases. If this validation is disabled in
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`spec/support/database/cross-join-allowlist.yml` then you can still validate an
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isolated code block using `with_cross_joins_prevented`.
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You can use this method like so:
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```ruby
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it 'does not join across databases' do
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with_cross_joins_prevented do
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::Ci::Build.joins(:project).to_a
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end
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end
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```
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This will raise an exception if the query joins across the two databases. The
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previous example is fixed by removing the join, like so:
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```ruby
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it 'does not join across databases' do
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with_cross_joins_prevented do
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::Ci::Build.preload(:project).to_a
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end
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end
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```
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You can see a real example of using this method for fixing a cross-join in
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<https://gitlab.com/gitlab-org/gitlab/-/merge_requests/67655>.
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#### Allowlist for existing cross-joins
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A cross-join across databases can be explicitly allowed by wrapping the code in the
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`::Gitlab::Database.allow_cross_joins_across_databases` helper method. Alternative
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way is to mark a given relation as `relation.allow_cross_joins_across_databases`.
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This method should only be used:
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- For existing code.
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- If the code is required to help migrate away from a cross-join. For example,
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in a migration that backfills data for future use to remove a cross-join.
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The `allow_cross_joins_across_databases` helper method can be used as follows:
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```ruby
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# Scope the block executing a object from database
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::Gitlab::Database.allow_cross_joins_across_databases(url: 'https://gitlab.com/gitlab-org/gitlab/-/issues/336590') do
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subject.perform(1, 4)
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end
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```
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```ruby
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# Mark a relation as allowed to cross-join databases
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def find_actual_head_pipeline
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all_pipelines
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.allow_cross_joins_across_databases(url: 'https://gitlab.com/gitlab-org/gitlab/-/issues/336891')
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.for_sha_or_source_sha(diff_head_sha)
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.first
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end
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```
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The `url` parameter should point to an issue with a milestone for when we intend
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to fix the cross-join. If the cross-join is being used in a migration, we do not
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need to fix the code. See <https://gitlab.com/gitlab-org/gitlab/-/issues/340017>
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for more details.
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### Removing cross-database transactions
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When dealing with multiple databases, it's important to pay close attention to data modification
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that affects more than one database.
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[Introduced](https://gitlab.com/gitlab-org/gitlab/-/issues/339811) GitLab 14.4, an automated check
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prevents cross-database modifications.
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When at least two different databases are modified during a transaction initiated on any database
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server, the application triggers a cross-database modification error (only in test environment).
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Example:
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```ruby
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# Open transaction on Main DB
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ApplicationRecord.transaction do
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ci_build.update!(updated_at: Time.current) # UPDATE on CI DB
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ci_build.project.update!(updated_at: Time.current) # UPDATE on Main DB
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end
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# raises error: Cross-database data modification of 'main, ci' were detected within
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# a transaction modifying the 'ci_build, projects' tables
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```
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The code example above updates the timestamp for two records within a transaction. With the
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ongoing work on the CI database decomposition, we cannot ensure the schematics of a database
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transaction.
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If the second update query fails, the first update query will not be
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rolled back because the `ci_build` record is located on a different database server. For
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more information, look at the
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[transaction guidelines](transaction_guidelines.md#dangerous-example-third-party-api-calls)
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page.
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#### Fixing cross-database errors
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##### Removing the transaction block
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Without an open transaction, the cross-database modification check cannot raise an error.
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By making this change, we sacrifice consistency. In case of an application failure after the
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first `UPDATE` query, the second `UPDATE` query will never execute.
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The same code without the `transaction` block:
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```ruby
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ci_build.update!(updated_at: Time.current) # CI DB
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ci_build.project.update!(updated_at: Time.current) # Main DB
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```
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##### Asynchronous processing
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If we need more guarantee that an operation finishes the work consistently we can execute it
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within a background job. A background job is scheduled asynchronously and retried several times
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in case of an error. There is still a very small chance of introducing inconsistency.
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Example:
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```ruby
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current_time = Time.current
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MyAsyncConsistencyJob.perform_async(cu_build.id)
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ci_build.update!(updated_at: current_time)
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ci_build.project.update!(updated_at: current_time)
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```
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The `MyAsyncConsistencyJob` would also attempt to update the timestamp if they differ.
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##### Aiming for perfect consistency
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At this point, we don't have the tooling (we might not even need it) to ensure similar consistency
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characteristics as we had with one database. If you think that the code you're working on requires
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these properties, then you can disable the cross-database modification check in your tests by wrapping the
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offending test code with a block and create a follow-up issue.
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```ruby
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allow_cross_database_modification_within_transaction(url: 'gitlab issue URL') do
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ApplicationRecord.transaction do
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ci_build.update!(updated_at: Time.current) # UPDATE on CI DB
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ci_build.project.update!(updated_at: Time.current) # UPDATE on Main DB
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end
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end
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```
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Don't hesitate to reach out to the
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[pods group](https://about.gitlab.com/handbook/engineering/development/enablement/data_stores/pods/)
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for advice.
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##### Avoid `dependent: :nullify` and `dependent: :destroy` across databases
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There may be cases where we want to use `dependent: :nullify` or `dependent: :destroy`
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across databases. This is technically possible, but it's problematic because
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these hooks run in the context of an outer transaction from the call to
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`#destroy`, which creates a cross-database transaction and we are trying to
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avoid that. Cross-database transactions caused this way could lead to confusing
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outcomes when we switch to decomposed, because now you have some queries
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happening outside the transaction and they may be partially applied while the
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outer transaction fails, which could lead to surprising bugs.
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For non-trivial objects that need to clean up data outside the
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database (for example, object storage), we recommend the setting
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[`dependent: :restrict_with_error`](https://guides.rubyonrails.org/association_basics.html#options-for-has-one-dependent).
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Such objects should be removed explicitly ahead of time. Using `dependent: :restrict_with_error`
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ensures that we forbid destroying the parent object if something is not cleaned up.
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If all you need to do is clean up the child records themselves from PostgreSQL,
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consider using [loose foreign keys](loose_foreign_keys.md).
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## Foreign keys that cross databases
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There are many places where we use foreign keys that reference across the two
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databases. This is not possible to do with two separate PostgreSQL
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databases, so we need to replicate the behavior we get from PostgreSQL in a
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performant way. We can't, and shouldn't, try to replicate the data guarantees
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given by PostgreSQL which prevent creating invalid references, but we still need a
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way to replace cascading deletes so we don't end up with orphaned data
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or records that point to nowhere, which might lead to bugs. As such we created
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["loose foreign keys"](loose_foreign_keys.md) which is an asynchronous
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process of cleaning up orphaned records.
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## Locking writes on the tables that don't belong to the database schemas
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When the CI database is promoted and the two databases are fully split,
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as an extra safeguard against creating a split brain situation,
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run the Rake task `gitlab:db:lock_writes`. This command locks writes on:
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- The `gitlab_main` tables on the CI Database.
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- The `gitlab_ci` tables on the Main Database.
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This Rake task adds triggers to all the tables, to prevent any
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`INSERT`, `UPDATE`, `DELETE`, or `TRUNCATE` statements from running
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against the tables that need to be locked.
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If this task was run against a GitLab setup that uses only a single database
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for both `gitlab_main` and `gitlab_ci` tables, then no tables will be locked.
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To undo the operation, run the opposite Rake task: `gitlab:db:unlock_writes`.
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